I am having the same problem but only with the Edge browser. If I use Firefox, I get all the channels I should. In my case, I live in Albany, OR, which is between Eugene and Portland. Both of those markets have the same networks but on different channels. I determined I am getting the Eugene channels, not the Portland channels which I should be getting.
I just checked my Stream again and it appears the problem has gone. I am getting the right channels on Edge again.
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